MyRCodesForDataAnalysis

My R Codes For Data Analysis

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In this repository I am going to collect R codes for data analysis.

The title says “My R Codes” but I am only the collector. I will try to refer the original sources as far as I can. Serdar Balci, MD, Pathologist

My aim is to collect all the codes one needs, where one starts with an excel or spss file and then end with the most common analysis used in histopathology papers : example table

There are plenty of ways to do an analysis in R, which is great but also confusing for the newbies. I will collect the codes here so that I can refer later and then update them as I learn more.

See the links for the Codes below:


WorldBankCountryAnalysis.R 1 cards.R 2 DataCamp.R 3 GABAHip.R 4 googleCite.R 5 makenames.R 6 R-Program-Env-1-2.R 8 SurvivalAnalysis.R 9 SurvivalAnalysisR.R 10 tangram.R 11 TurkPathScholar.R deneme.R geom_bartext.R gilbert-dahl.R GitHubUpdateV2.R join-animations-with-gganimate.R plumber.R plumberRun.R power_multiplot.R quRan-data-raw-clean_data.R Retrieve_pubmed_citation_data.R sf_transitions.R silge.R


12 ArticlesPerJournalsPerCountry.Rmd 13 CountryBasedComparison.Rmd 14 JournalWatchPBPath.Rmd 15 MeSH_Terms_Pathology_Articles_From_Turkey.Rmd 16 6-tables.Rmd arsenal.Rmd AutomatedDashboardDeviation.Rmd Autoreport.Rmd bbplot.Rmd Bibliography.Rmd bioconductor.Rmd Biyoinformatik.Rmd CancerInSilico.Rmd CancerPackages.Rmd CloudForResearch.Rmd codes.Rmd CompareMeans.Rmd CompareProportions.Rmd ContingencyTables.Rmd Correlations.Rmd DataList.Rmd DataScienceLiveBook.Rmd datatable.Rmd DataTools.Rmd DecisionTreeKararAgaci.Rmd DescriptiveStatistics.Rmd drive.Rmd edirect-addin.Rmd eurostat.Rmd EvidenceSynthesisProjects.Rmd ExplatoryDataAnalysisSummaryStatistics.Rmd FileOrganization.Rmd finalfit.Rmd finalfit2.Rmd FlippingCoin.Rmd formattable.Rmd Formulas.Rmd GeneralLinearModels.Rmd GeneralResources.Rmd GettingDataVeriYukleme.Rmd GitHub.Rmd githubdocument.Rmd googledrive-trial.Rmd GoogleScholar.Rmd Graphs.Rmd h2o.Rmd HierarchicalClustering.Rmd HistopathologyResearchTemplate.Rmd How-To-Use-R-With-Excel.Rmd htmlclean.Rmd htmldocco.Rmd huxtable.Rmd HypothesisTesting.Rmd keras.Rmd KMeansClustering.Rmd lessR.Rmd LinearRegression.Rmd MachineLearning.Rmd Markdown.Rmd material.Rmd MultiplePages.Rmd mxnet.Rmd news.Rmd Ninja.Rmd OpenCPU.Rmd papeR.Rmd papeR2.Rmd Power_Analysis.Rmd power.Rmd PowerAnalysis.Rmd PrepareData.Rmd PythonPandas.Rmd R-Arayuzler.Rmd R-Giris.Rmd R-Tipps.Rmd radix.Rmd rchess.Rmd readthedown.Rmd Regression.Rmd reprex.Rmd ReproducibleResearch.Rmd RISmed.Rmd RinPathologyResearch.Rmd rmarkdown_websites_tutorial.Rmd rmarkdown_websites_tutorial2.Rmd ROC.Rmd rorcid.Rmd RPackagesUsed.Rmd SankeyDiagrams.Rmd SensitivitySpecificity.Rmd shiny.Rmd ShinyCodes.Rmd snahelper.Rmd summarytools_introduction.Rmd summarytools_markdown.Rmd survival_analysis_in_r_tutorial.Rmd survival_analysis_in_r_tutorial2.Rmd SurvivalAnalysis.Rmd SyncingGitHubFork.Rmd Table.Rmd tensorflow.Rmd TextMining.Rmd the-lesser-known-stars-of-the-tidyverse.Rmd tuftedoc.Rmd Tutorials.Rmd tweetbook1.Rmd Twitter.Rmd TwitterDashboard.Rmd Untitled1.Rmd Untitled22.Rmd VisualisationGraphsPlots.Rmd WebScrapping.Rmd WhereToLearnR.Rmd


Lecture Notes

R-Arayuzler

R-Giris

Where To Learn R

Getting Data into R / Veriyi R’a yükleme

https://sbalci.github.io/MyRCodesForDataAnalysis/GettingDataVeriYukleme.nb.html

Prepare Data for Analysis / Veriyi Analiz için hazırlamak

https://sbalci.github.io/MyRCodesForDataAnalysis/PrepareData.nb.html

data.table

https://sbalci.github.io/MyRCodesForDataAnalysis/datatable.nb.html

File organization best practices

https://sbalci.github.io/MyRCodesForDataAnalysis/FileOrganization.nb.html

Analysis

Descriptive Statistics, Exploratory Data Analysis, Summary Statistics

https://sbalci.github.io/MyRCodesForDataAnalysis/DescriptiveStatistics.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/ExplatoryDataAnalysisSummaryStatistics.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/freq-tables.html

the-lesser-known-stars-of-the-tidyverse.nb.html

Hypothesis Testing

https://sbalci.github.io/MyRCodesForDataAnalysis/HypothesisTesting.nb.html

Compare Means

https://sbalci.github.io/MyRCodesForDataAnalysis/CompareMeans.nb.html

Compare Proportions

https://sbalci.github.io/MyRCodesForDataAnalysis/CompareProportions.nb.html

Survival Analysis in R

https://sbalci.github.io/MyRCodesForDataAnalysis/SurvivalAnalysis.nb.html

https://www.emilyzabor.com/tutorials/survival_analysis_in_r_tutorial.html

Contingency Tables

https://sbalci.github.io/MyRCodesForDataAnalysis/ContingencyTables.nb.html

Other Analysis

Regression

https://sbalci.github.io/MyRCodesForDataAnalysis/Regression.nb.html

LinearRegression.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/LinearRegression.nb.html

General Linear Models

https://sbalci.github.io/MyRCodesForDataAnalysis/GeneralLinearModels.nb.html

Decision Trees

https://sbalci.github.io/MyRCodesForDataAnalysis/DecisionTreeKararAgaci.nb.html

Clustering

K Means Clustering

https://sbalci.github.io/MyRCodesForDataAnalysis/KMeansClustering.nb.html

Hierarchical Clustering

https://sbalci.github.io/MyRCodesForDataAnalysis/HierarchicalClustering.nb.html

Graphs Plots

https://sbalci.github.io/MyRCodesForDataAnalysis/VisualisationGraphsPlots.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/Graphs.nb.html

Sankey Diagrams

https://sbalci.github.io/MyRCodesForDataAnalysis/SankeyDiagrams.nb.html

Reporting

Reproducible Research

https://sbalci.github.io/MyRCodesForDataAnalysis/ReproducibleResearch.nb.html

Use R Markdown

https://sbalci.github.io/MyRCodesForDataAnalysis/Markdown.nb.html

Tables

https://sbalci.github.io/MyRCodesForDataAnalysis/Table.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/finalfit.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/formattable.nb.html

Autoreport

https://sbalci.github.io/MyRCodesForDataAnalysis/Autoreport.nb.html

shiny

https://sbalci.github.io/MyRCodesForDataAnalysis/shiny.nb.html

Creating websites in R

https://www.emilyzabor.com/tutorials/rmarkdown_websites_tutorial.html

Bioinformatics

bioconductor

https://sbalci.github.io/MyRCodesForDataAnalysis/bioconductor.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/CancerInSilico.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/CancerPackages.nb.html

Backup Analysis and Data

GitHub

https://sbalci.github.io/MyRCodesForDataAnalysis/GitHub.nb.html

SyncingGitHubFork.nb.html

Text Analysis Sentiment Analysis

https://sbalci.github.io/MyRCodesForDataAnalysis/TextMining.nb.html

Twitter Analysis With R

https://sbalci.github.io/MyRCodesForDataAnalysis/Twitter.nb.html

News

https://sbalci.github.io/MyRCodesForDataAnalysis/news.nb.html

web scrapping

https://sbalci.github.io/MyRCodesForDataAnalysis/WebScrapping.nb.html

Bibliography

Other Bibliographic Studies: https://sbalci.github.io/ResearchOnBibliography/

https://sbalci.github.io/MyRCodesForDataAnalysis/Bibliography.nb.html

PubMed

RISmed

https://sbalci.github.io/MyRCodesForDataAnalysis/RISmed.nb.html

ORCID

rorcid

https://sbalci.github.io/MyRCodesForDataAnalysis/rorcid.nb.html

Google Scholar

https://sbalci.github.io/MyRCodesForDataAnalysis/GoogleScholar.nb.html

Scholar

Coauthor

Power Analysis

https://sbalci.github.io/MyRCodesForDataAnalysis/PowerAnalysis.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/Power_Analysis.nb.html https://sbalci.github.io/MyRCodesForDataAnalysis/PowerAnalysis.nb.html

Formulas

https://sbalci.github.io/MyRCodesForDataAnalysis/Formulas.nb.html

Flipping Coin

https://sbalci.github.io/MyRCodesForDataAnalysis/FlippingCoin.nb.html

General Resources

https://sbalci.github.io/MyRCodesForDataAnalysis/GeneralResources.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/DataScienceLiveBook.nb.html

Package List

https://sbalci.github.io/MyRCodesForDataAnalysis/RPackagesUsed.nb.html

Data List

https://sbalci.github.io/MyRCodesForDataAnalysis/DataList.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/eurostat.nb.html

Data Tools

https://sbalci.github.io/MyRCodesForDataAnalysis/DataTools.nb.html

Miscellaneous

https://sbalci.github.io/MyRCodesForDataAnalysis/codes.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/OpenCPU.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/papeR.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/Tutorials.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/PythonPandas.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/lessR.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/arsenal.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/rchess.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/EvidenceSynthesisProjects.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/MachineLearning.nb.html

https://sbalci.github.io/MyRCodesForDataAnalysis/Correlations.nb.html

https://xgboost.readthedocs.io/en/latest/index.html

https://sbalci.github.io/MyRCodesForDataAnalysis/R-Tipps.nb.html

Feedback

You may also contact with me with the comment field below.